Package: phylotools 0.2.5

phylotools: Phylogenetic Tools for Eco-Phylogenetics

A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

Authors:Jinlong Zhang [aut, cre], Nancai Pei [ctb], Xiangcheng Mi [ctb]

phylotools_0.2.5.tar.gz
phylotools_0.2.5.zip(r-4.5)phylotools_0.2.5.zip(r-4.4)phylotools_0.2.5.zip(r-4.3)
phylotools_0.2.5.tgz(r-4.5-any)phylotools_0.2.5.tgz(r-4.4-any)phylotools_0.2.5.tgz(r-4.3-any)
phylotools_0.2.5.tar.gz(r-4.5-noble)phylotools_0.2.5.tar.gz(r-4.4-noble)
phylotools_0.2.5.tgz(r-4.4-emscripten)phylotools_0.2.5.tgz(r-4.3-emscripten)
phylotools.pdf |phylotools.html✨
phylotools/json (API)

# Install 'phylotools' in R:
install.packages('phylotools', repos = c('https://helixcn.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helixcn/phylotools/issues

On CRAN:

Conda:

7.31 score 11 stars 368 scripts 524 downloads 10 mentions 12 exports 5 dependencies

Last updated 5 months agofrom:b8716a4b9c. Checks:6 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 09 2025
R-4.5-winNOTEMar 09 2025
R-4.5-macNOTEMar 09 2025
R-4.5-linuxNOTEMar 09 2025
R-4.4-winOKMar 09 2025
R-4.4-macOKMar 09 2025
R-4.4-linuxOKMar 09 2025
R-4.3-winOKMar 09 2025
R-4.3-macOKMar 09 2025

Exports:clean.fasta.namedat2fastadat2phylipget.fasta.nameget.phylip.nameread.fastaread.phyliprename.fastarm.sequence.fastasplit_datsub.taxa.labelsupermat

Dependencies:apedigestlatticenlmeRcpp

Building supermatrix matrices using the phylotools package

Jinlong Zhang

Rendered fromphylotools-vignette.Rmdusingknitr::rmarkdownon Mar 09 2025.

Last update: 2021-03-24
Started: 2021-02-09