Package: phylotools 0.2.4

phylotools: Phylogenetic Tools for Eco-Phylogenetics

A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

Authors:Jinlong Zhang [aut, cre], Nancai Pei [ctb], Xiangcheng Mi [ctb]

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phylotools.pdf |phylotools.html✨
phylotools/json (API)

# Install 'phylotools' in R:
install.packages('phylotools', repos = c('https://helixcn.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/helixcn/phylotools/issues

On CRAN:

12 exports 11 stars 2.81 score 5 dependencies 10 mentions 322 scripts 504 downloads

Last updated 3 years agofrom:758d338b2d. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winNOTESep 14 2024
R-4.5-linuxNOTESep 14 2024
R-4.4-winOKSep 14 2024
R-4.4-macOKSep 14 2024
R-4.3-winOKSep 14 2024
R-4.3-macOKSep 14 2024

Exports:clean.fasta.namedat2fastadat2phylipget.fasta.nameget.phylip.nameread.fastaread.phyliprename.fastarm.sequence.fastasplit_datsub.taxa.labelsupermat

Dependencies:apedigestlatticenlmeRcpp

Building supermatrix matrices using the phylotools package

Jinlong Zhang

Rendered fromphylotools-vignette.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2021-03-24
Started: 2021-02-09