Package: phylotools 0.2.5

phylotools: Phylogenetic Tools for Eco-Phylogenetics

A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

Authors:Jinlong Zhang [aut, cre], Nancai Pei [ctb], Xiangcheng Mi [ctb]

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phylotools.pdf |phylotools.html✨
phylotools/json (API)

# Install 'phylotools' in R:
install.packages('phylotools', repos = c('https://helixcn.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/helixcn/phylotools/issues

On CRAN:

7.31 score 11 stars 368 scripts 330 downloads 10 mentions 12 exports 5 dependencies

Last updated 4 months agofrom:b8716a4b9c. Checks:5 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 08 2025
R-4.5-winNOTEJan 08 2025
R-4.5-linuxNOTEJan 08 2025
R-4.4-winOKJan 08 2025
R-4.4-macOKJan 08 2025
R-4.3-winOKJan 08 2025
R-4.3-macOKJan 08 2025

Exports:clean.fasta.namedat2fastadat2phylipget.fasta.nameget.phylip.nameread.fastaread.phyliprename.fastarm.sequence.fastasplit_datsub.taxa.labelsupermat

Dependencies:apedigestlatticenlmeRcpp

Building supermatrix matrices using the phylotools package

Jinlong Zhang

Rendered fromphylotools-vignette.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2021-03-24
Started: 2021-02-09