Package: spaa 0.5.3
spaa: SPecies Association Analysis
Miscellaneous functions for analysing species association and niche overlap.
Authors:
spaa_0.5.3.tar.gz
spaa_0.5.3.zip(r-4.5)spaa_0.5.3.zip(r-4.4)spaa_0.5.3.zip(r-4.3)
spaa_0.5.3.tgz(r-4.4-any)spaa_0.5.3.tgz(r-4.3-any)
spaa_0.5.3.tar.gz(r-4.5-noble)spaa_0.5.3.tar.gz(r-4.4-noble)
spaa_0.5.3.tgz(r-4.4-emscripten)spaa_0.5.3.tgz(r-4.3-emscripten)
spaa.pdf |spaa.html✨
spaa/json (API)
| # Install 'spaa' in R: |
| install.packages('spaa', repos = c('https://helixcn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/helixcn/spaa/issues
Datasets:
- datasample - A sample dataset for a community
- splist - A sample dataframe showing species taxonomic information
- testdata - A sample dataset s
Last updated 3 years agofrom:83ca99e292. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 20 2024 |
| R-4.5-win | OK | Aug 20 2024 |
| R-4.5-linux | OK | Aug 20 2024 |
| R-4.4-win | OK | Aug 20 2024 |
| R-4.4-mac | OK | Aug 20 2024 |
| R-4.3-win | OK | Aug 20 2024 |
| R-4.3-mac | OK | Aug 20 2024 |
Exports:data2matfreq.calcniche.overlapniche.overlap.bootniche.overlap.boot.pairniche.overlap.pairniche.widthplotlowertriplotnetworksp.assocsp.pairsub.sp.matrix
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| SPecies Association Analysis | spaa-package spaa |
| Convert field records to community matrix | data2mat |
| A sample dataset for a community | datasample |
| Compute species' relative frequency | freq.calc |
| Niche overlap between each pair of species | niche.overlap |
| Boostrap niche overlap indices | niche.overlap.boot |
| Boostrap the niche overlap indices | niche.overlap.boot.pair |
| Compute niche overlap index between two species | niche.overlap.pair |
| Niche width | niche.width |
| Generate a graphs showing correlation matrix (lower semi matrix) (Deprecated) | plotlowertri |
| Plot correlation network (Deprecated) | plotnetwork |
| Analyzing species association | sp.assoc |
| Species association between each pair of species | sp.pair |
| A sample dataframe showing species taxonomic information (Deprecated) | splist |
| Subset species based on relative frequency | sub.sp.matrix |
| A sample dataset s | testdata |
